PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009624128.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 289aa MW: 32637.5 Da PI: 6.5274

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009624128.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.8	2.9e-55	8	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp GfrFhPtdeel+++yL++kv++ ++++ ++++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ XP_009624128.1 8 LPSGFRFHPTDEELITYYLRNKVSDFSFTA-AAFADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFH- 100 699**********************999.78***********999999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g l+g+kktLvfy+grapkgekt+W+mheyrle XP_009624128.1 101 GGVLIGMKKTLVFYRGRAPKGEKTNWIMHEYRLE 134 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-63	6	154	IPR003441	NAC domain
PROSITE profile	PS51005	59.135	8	154	IPR003441	NAC domain
Pfam	PF02365	1.9E-28	9	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEEINNKLPS GFRFHPTDEE LITYYLRNKV SDFSFTAAAF ADVDLNKCEP WDLPAKASMG 60 EKEWYFFSLK DRKYPTGLRT NRATEAGYWK TTGKDKEIFH GGVLIGMKKT LVFYRGRAPK 120 GEKTNWIMHE YRLETELGFK PSKEEWVVCR VFQKSPTVKK PNPTSSQSQE SPNCDTNYTI 180 ANEIIGDFEL SNLSSIATPS SGISNISLQN YNNENMNMNL ASAATRSEAA SNNIVPLLPN 240 WSSSLLSSNY LSSSVNSLLF SSLQSRVNYH TKEAATNIGD YFVNDFTLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	8	160	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	8	160	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	8	160	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	8	160	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-55	8	160	20	174	NAC domain-containing protein 19
3swm_B	6e-55	8	160	20	174	NAC domain-containing protein 19
3swm_C	6e-55	8	160	20	174	NAC domain-containing protein 19
3swm_D	6e-55	8	160	20	174	NAC domain-containing protein 19
3swp_A	6e-55	8	160	20	174	NAC domain-containing protein 19
3swp_B	6e-55	8	160	20	174	NAC domain-containing protein 19
3swp_C	6e-55	8	160	20	174	NAC domain-containing protein 19
3swp_D	6e-55	8	160	20	174	NAC domain-containing protein 19
4dul_A	5e-55	8	160	17	171	NAC domain-containing protein 19
4dul_B	5e-55	8	160	17	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510212	1e-161	AF510212.1 Petunia x hybrida nam-like protein 15 (NH15) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624128.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	2e-81	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0J8CAG6	1e-121	A0A0J8CAG6_BETVU; Uncharacterized protein
STRING	POPTR_0015s03700.1	1e-120	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-86	NAC domain containing protein 58